update sync encoding

MediaBrowser.MediaEncoding/Encoder/VideoEncoder.cs

@@ -5,6 +5,7 @@ using MediaBrowser.Controller.Library;
 using MediaBrowser.Controller.LiveTv;
 using MediaBrowser.Controller.MediaEncoding;
 using MediaBrowser.Controller.Session;
+using MediaBrowser.Model.Dlna;
 using MediaBrowser.Model.IO;
 using MediaBrowser.Model.Logging;
 using System;
@@ -26,7 +27,8 @@ namespace MediaBrowser.MediaEncoding.Encoder
             var format = string.Empty;
             var keyFrame = string.Empty;
 
-            if (string.Equals(Path.GetExtension(state.OutputFilePath), ".mp4", StringComparison.OrdinalIgnoreCase))
+            if (string.Equals(Path.GetExtension(state.OutputFilePath), ".mp4", StringComparison.OrdinalIgnoreCase) &&
+                state.Options.Context == EncodingContext.Streaming)
             {
                 format = " -f mp4 -movflags frag_keyframe+empty_moov";
             }

MediaBrowser.Server.Implementations/EntryPoints/LibraryChangedNotifier.cs

@@ -294,7 +294,7 @@ namespace MediaBrowser.Server.Implementations.EntryPoints
             }
 
             // Return it only if it's in the user's library
-            if (includeIfNotFound || allRecursiveChildren.ContainsKey(item.Id))
+            if (includeIfNotFound || allRecursiveChildren.ContainsKey(item.Id) || (item.Parents.Any(i => i is BasePluginFolder) && item.IsVisibleStandalone(user)))
             {
                 return new[] { item };
             }